PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G083800.1
Common NameB456_013G083800, LOC105781127
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 90aa    MW: 9887.25 Da    PI: 6.5069
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G083800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-0817561554
                        HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +i +  ++L++l+P++++ +s K s + +L+++++YI++L
  Gorai.013G083800.1 17 QITHLVFKLQQLIPELCARRSLKASASKVLQETCDYIRNL 56
                        6777889********88*********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.632256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-51656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-71674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-82470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSGRRSGSGV SSISDDQITH LVFKLQQLIP ELCARRSLKA SASKVLQETC DYIRNLHKEV  60
EDLSDRLSQL LASIDTDNDQ AAIVRSLLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461153.13e-58PREDICTED: transcription factor PRE6
SwissprotQ9LJX12e-32PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0D2VCD64e-58A0A0D2VCD6_G
STRINGSolyc02g067380.2.16e-38(Solanum lycopersicum)
STRINGPGSC0003DMT4000177486e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.18e-33bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]